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Commit ee68a6e3 authored by abuddenberg's avatar abuddenberg
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Added support for syncing all available figures for NCA rollout

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bin/problems
View file @ ee68a6e3
......@@ -11,8 +11,8 @@ gcis = GcisClient('http://data.gcis-dev-front.joss.ucar.edu', *gcis_dev_auth)
# gcis = GcisClient('http://data-stage.globalchange.gov', *gcis_stage_auth)
whitelisted_dupes = [
'e13cdf2e-0699-4c52-a642-56c8fc3317c4', #33.11 #34.11
'03937439-cc5a-45c7-a0fd-78b863c49979', #33.11 #34.11
'e13cdf2e-0699-4c52-a642-56c8fc3317c4', #33.1 #34.11
'03937439-cc5a-45c7-a0fd-78b863c49979', #33.1 #34.11
'0bcb7984-50c0-4f94-9946-c3fa635125a4', #2.1 #34.2
......
bin/sync_figures
View file @ ee68a6e3
#!/usr/bin/env python
__author__ = 'abuddenberg'
from gcis_clients import WebformClient, GcisClient, gcis_dev_auth, gcis_stage_auth, webform_token
from gcis_clients import WebformClient, GcisClient, gcis_dev_auth, gcis_stage_auth, webform_token, AssociationException
from gcis_clients.sync_utils import move_images_to_gcis, sync_dataset_metadata, realize_contributors, realize_parents
from collections import OrderedDict
webform = WebformClient('http://resources.assessment.globalchange.gov', webform_token)
gcis = GcisClient('http://data.gcis-dev-front.joss.ucar.edu', *gcis_dev_auth)
# gcis = GcisClient('http://data-stage.globalchange.gov', *gcis_stage_auth)
# gcis = GcisClient('http://data.gcis-dev-front.joss.ucar.edu', *gcis_dev_auth)
gcis = GcisClient('http://data-stage.globalchange.gov', *gcis_stage_auth)
sync_metadata_tree = {
#Reports
......@@ -20,17 +20,25 @@ sync_metadata_tree = {
('/metadata/figures/3293', 'observed-increase-in-frostfree-season-length'), # 2.10
('/metadata/figures/3294', 'projected-changes-in-frostfree-season-length'), # 2.11
('/metadata/figures/2677', 'observed-us-precipitation-change'), # 2.12
('/metadata/figures/3296', 'ann-max-precip-cons-dry-day'), # 2.13
('/metadata/figures/3297', 'projected-precipitation-change-by-season'), # 2.14
('/metadata/figures/2955', 'proj-precip-change'), # 2.15
('/metadata/figures/3298', 'observed-us-trend-in-heavy-precipitation'), # 2.16
('/metadata/figures/2506', 'observed-change-in-very-heavy-precipitation'), # 2.17
('/metadata/figures/2997', 'observed-change-in-very-heavy-precipitation-2'), # 2.18
('/metadata/figures/3170', 'global-temperature-and-carbon-dioxide'), # 2.2
('/metadata/figures/2939', 'projected-changes-in-soil-moisture-for-the-western-us'), # 2.22
('/metadata/figures/3304', 'observed-trends-in-hurricane-power-dissipation'), # 2.23
('/metadata/figures/3305', 'variation-of-storm-frequency-and-intensity-during-the-cold-season-november--march'), # 2.24
('/metadata/figures/3067', 'ice-cover-in-the-great-lakes'), # 2.27
('/metadata/figures/3073', 'projected-arctic-sea-ice-decline'), # 2.29
('/metadata/figures/2940', 'as-oceans-absorb-co-they-become-more-acidic'), # 2.30
('/metadata/figures/2523', 'shells-dissolve-in-acidified-ocean-water'), # 2.31
('/metadata/figures/3078', 'emissions-levels-determine-temperature-rises'), # 2.4
('/metadata/figures/3172', 'projected-change-in-average-annual-temperature'), #2.5
('/metadata/figures/3176', 'projected-change-in-average-annual-precipitation'), # 2.6
('/metadata/figures/3175', 'observed-us-temperature-change'), # 2.7
('/metadata/figures/3001', 'projected-temperature-change'), # 2.8
('/metadata/figures/3000', 'projected-temperature-change-by-20712099-cmip5-models'), #2.9
]),
......@@ -46,8 +54,8 @@ sync_metadata_tree = {
]),
#Chapter 5
('transportation', [
# ('/metadata/figures/3088', 'possible-future-flood-depths-in-mobile-al-with-rising-sea-level'), # 5.1
# ('/metadata/figures/2905', 'gulf-coast-transportation-hubs-at-risk'), # 5.3
('/metadata/figures/3088', 'possible-future-flood-depths-in-mobile-al-with-rising-sea-level'), # 5.1
('/metadata/figures/2905', 'gulf-coast-transportation-hubs-at-risk'), # 5.3
('/metadata/figures/3568', 'hurricane-sandy-causes-flooding-in-new-york-city-subway-stations'), # 5.4
('/metadata/figures/2952', 'role-of-adaptive-strategies-and-tactics-in-reducing-impacts-and-consequences'), # 5.5
('/metadata/figures/3169', 'tropical-storm-impact-on-vermont-road'), # 5.6
......@@ -69,6 +77,7 @@ sync_metadata_tree = {
]),
#Chapter 8
('ecosystems', [
('/metadata/figures/2576', 'the-aftermath-of-hurricanes'), # 8.2
('/metadata/figures/2456', 'adaptation-planning-and-implementation-framework'), # 8.3
('/metadata/figures/3574', 'biological-responses-to-climate-change'), # 8.4
]),
......@@ -99,6 +108,7 @@ sync_metadata_tree = {
('/metadata/figures/3131', 'indigenous-populations-extend-beyond-reservation-lands'), # 12.1
('/metadata/figures/2594', 'many-tribes-many-climate-change-initiatives'), # 12.2
('/metadata/figures/2909', 'sand-dune-expansion'), # 12.3
('/metadata/figures/3572', 'sea-ice-cover-reaches-record-low'), # 12.4
('/metadata/figures/2911', 'arctic-marine-food-web'), # 12.5
]),
#Chapter 13
......@@ -115,6 +125,7 @@ sync_metadata_tree = {
# Chapter 15
('biogeochemical-cycles', [
('/metadata/figures/2874', 'major-north-american-carbon-dioxide-sources-and-sinks'), # 15.1
('/metadata/figures/2574', 'nitrogen-emissions'), # 15.3
('/metadata/figures/2575', 'many-factors-combine-to-affect-biogeochemical-cycles'), # 15.4
]),
#Chapter 16
......@@ -149,9 +160,11 @@ sync_metadata_tree = {
('/metadata/figures/2990', 'projected-change-in-number-of-warm-nights'), # 19.3
('/metadata/figures/2991', 'projected-change-in-number-of-heavy-precipitation-days'), # 19.4
('/metadata/figures/3002', 'projected-change-in-number-of-consecutive-dry-days'), # 19.5
('/metadata/figures/3280', 'historical-and-current-range-of-sage-grouse-habitat') #19.7
]),
#Chapter 20
('southwest', [
('/metadata/figures/2568', 'coastal-risks-posed-by-sea-level-rise-and-high-tides'), #20.5
('/metadata/figures/3484', 'urban-heat-and-public-health'), # 20.6
]),
#Chapter 21
......@@ -166,6 +179,7 @@ sync_metadata_tree = {
#Chapter 23
('hawaii', [
('/metadata/figures/2834', 'us-pacific-islands-region'), # 23.1
('/metadata/figures/3283', 'high-and-low-pacific-islands-face-different-threats'), #23.2
('/metadata/figures/3284', 'increased-acidification-decreases-suitable-coral-habitat'), # 23.3
('/metadata/figures/2837', 'observed-changes-in-annual-rainfall-in-the-western-north-pacific'), # 23.4
('/metadata/figures/2838', 'native-plants-at-risk'), # 23.5
......@@ -173,6 +187,12 @@ sync_metadata_tree = {
('/metadata/figures/2840', 'residents-of-lowlying-islands-at-risk'), # 23.7
('/metadata/figures/3286', 'higher-sea-level-rise-in-western-pacific'), # 23.8
]),
#Chapter 24
('oceans-marine-resources', [
('/metadata/figures/3106', 'observed-ocean-warming'), # 24.1
('/metadata/figures/2560', 'ocean-acidification-reduces-size-of-clams'), #24.3
('/metadata/figures/2853', 'warming-seas-are-a-doubleblow-to-corals') # 24.4
]),
#Chapter 25
('coastal-zone', [
('/metadata/figures/2540', 'adapting-coastal-infrastructure-to-sea-level-rise-and-land-loss'), # 25.5
......@@ -202,6 +222,7 @@ sync_metadata_tree = {
#Chapter 33: Climate Science Appendix
('appendix-climate-science-supplement', [
('/metadata/figures/3112', 'indicators-of-warming-from-multiple-data-sets'), # 33.10
('/metadata/figures/3097', 'human-influence-on-the-greenhouse-effect'), #33.1
('/metadata/figures/3138', 'warming-trend-and-effects-of-el-nino-la-nina'), # 33.14
('/metadata/figures/2798', 'detection-and-attribution-as-forensics'), # 33.16
('/metadata/figures/3301', 'human-influences-apparent-in-many-aspects-of-the-changing-climate'), # 33.17
......@@ -213,6 +234,7 @@ sync_metadata_tree = {
('/metadata/figures/2806', 'ice-cover-on-lake-mendota'), # 33.29
('/metadata/figures/2534', 'app-extreme-precipitation'), # 33.32
('/metadata/figures/2809', 'extreme-drought-in-the-us-and-mexico-past-and-future'), # 33.35
('/metadata/figures/3148', 'arctic-sea-ice-decline'), # 33.37
('/metadata/figures/2393', 'permafrost-temperatures-rising'), # 33.38
('/metadata/figures/3144', 'melting-of-arctic-landbased-ice'), # 33.39
('/metadata/figures/3145', 'melting-glaciers-lead-to-sea-level-rise'), # 33.40
......@@ -223,6 +245,7 @@ sync_metadata_tree = {
#Chapter 34: FAQ/CAQ
('appendix-faqs', [
('/metadata/figures/2663', 'us-annual-temperature'), # 34.1
('/metadata/figures/3096', 'caq-human-influence-on-the-greenhouse-effect'), # 34.11
('/metadata/figures/3300', 'caq-human-influences-apparent-in-many-aspects-of-the-changing-climate'), # 34.13
('/metadata/figures/3091', 'published-climate-change-research-papers'), # 34.18
('/metadata/figures/3075', 'caq-ten-indicators-of-a-warming-world'), # 34.2
......@@ -235,11 +258,22 @@ sync_metadata_tree = {
])
}
images_with_multiple_figures = {
'e13cdf2e-0699-4c52-a642-56c8fc3317c4': ['human-influence-on-the-greenhouse-effect', 'caq-human-influence-on-the-greenhouse-effect'], #33.1 #34.11
'03937439-cc5a-45c7-a0fd-78b863c49979': ['human-influence-on-the-greenhouse-effect', 'caq-human-influence-on-the-greenhouse-effect'], #33.1 #34.11
'0bcb7984-50c0-4f94-9946-c3fa635125a4': ['ten-indicators-of-a-warming-world', 'caq-ten-indicators-of-a-warming-world'], #2.1 #34.2
'eb9bd7dc-3e3a-4001-9a64-f2a0763b3f64': ['shells-dissolve-in-acidified-ocean-water', 'ocean-acidification-and-the-food-web'], #2.31 #34.21
'8c679de0-4a6c-4fc9-bbd1-59251ffe3d7f': ['shells-dissolve-in-acidified-ocean-water', 'ocean-acidification-and-the-food-web'], #2.31 #34.21
'a1bd40f2-424e-4af8-8d3d-f44ba7ba36b6': ['human-influences-apparent-in-many-aspects-of-the-changing-climate', 'caq-human-influences-apparent-in-many-aspects-of-the-changing-climate'], #33.17 #34.13
'834f7624-40de-4a09-9ced-faaca30d4d6d': ['ice-cover-in-the-great-lakes', 'midwest-ice-cover-in-the-great-lakes'], #2.27 #18.7
}
def main():
print gcis.test_login()
# sync_dataset_metadata(gcis, webform.get_aggregated_datasets())
sync(replace=False)
# sync(replace=True)
cleanup_after_replace()
def sync(replace=False):
......@@ -265,8 +299,20 @@ def sync(replace=False):
#Hack: override webform's title in favor of gcis
figure_obj.title = gcis_fig.title if gcis_fig.title not in (None, '') else figure_obj.title
if len(gcis_fig.contributors) > 1:
print '*** Multiple contributors: ', gcis_id
if replace:
for image in figure_obj.images:
#Hack: removing existing contributors to address orphans
for c in gcis_fig.contributors:
gcis.delete_contributor_figure_assoc(c, report_id, chapter_id, gcis_id)
# #Remove existing parents
for p in gcis_fig.parents:
gcis.delete_figure_pub_assoc(report_id, gcis_id, p)
for image in gcis_fig.images:
#TODO: There are better ways to do this. Build File support.
print 'Deleting {img}'.format(img=image.identifier)
gcis.delete_image(image)
......@@ -281,5 +327,12 @@ def sync(replace=False):
count += 1
print count
#Hack
def cleanup_after_replace():
for image_id in images_with_multiple_figures:
for figure_id in images_with_multiple_figures[image_id]:
print gcis.associate_image_with_figure(image_id, 'nca3', figure_id)
if __name__ == '__main__':
main()
gcis_clients/__init__.py
View file @ ee68a6e3
from gcis_client import GcisClient
from gcis_client import GcisClient, AssociationException
from webform_client import WebformClient
from nca3_client import Nca3Client
......
gcis_clients/domain.py
View file @ ee68a6e3
......@@ -416,8 +416,12 @@ class Organization(Gcisbase):
'Institute of the Environment': 'university-arizona',
'USGS': 'us-geological-survey',
'University of Puerto Rico': 'university-puerto-rico',
'University of Alaska': 'university-alaska'
'University of Alaska': 'university-alaska',
'U.S. Department of Agriculture': 'us-department-agriculture',
'Kiksapa Consulting': 'kiksapa-consulting-llc',
'Centers for Disease Control and Prevention': 'centers-disease-control-and-prevention',
'Pacific Northwest Laboratories': 'pacific-northwest-national-laboratory',
'Susanne Moser Research & Consulting': 'susanne-moser-research-consulting'
}
......@@ -435,7 +439,7 @@ class Organization(Gcisbase):
class Contributor(Gcisbase):
def __init__(self, data):
self.gcis_fields = ['role_type_identifier', 'organization_uri', 'uri', 'href', 'person_uri']
self.gcis_fields = ['role_type_identifier', 'organization_uri', 'uri', 'href', 'person_uri', 'person_id', 'id']
#Hack
self.people_role_map = {
......@@ -461,7 +465,14 @@ class Contributor(Gcisbase):
'Emily Cloyd': 'contributing_author',
'F. Chapin': 'scientist',
' Chapin': 'scientist',
'Andrew Buddenberg': 'analyst'
'Andrew Buddenberg': 'analyst',
'Jerry Hatfield': 'author',
'George Luber': 'lead_author',
'Kathy Hibbard': 'lead_author',
'Susanne Moser': 'convening_lead_author',
'Bull Bennett': 'convening_lead_author',
'Ernesto Weil': 'scientist',
'William Elder': 'scientist'
}
self._role = None
......@@ -527,7 +538,7 @@ class Parent(Gcisbase):
self.search_hints = {
'report': {
'The State of the Climate 2009 Highlights': 'usgcrp-globclimchhighlights-2009',
'The State of the Climate 2009 Highlights': 'noaa-stateofclim-2009',
'Global Climate Change Impacts in the United States': 'nca2',
'Impacts of Climate Change and Variability on Transportation Systems and Infrastructure: Gulf Study, Phase I.': 'ccsp-sap-4_7-2008',
'Climate and Energy-Water-Land System Interactions': 'pnnl-21185',
......@@ -546,7 +557,7 @@ class Parent(Gcisbase):
'How to Avoid Dangerous Climate Change. A Target for U.S. Emissions Reductions': 'ucusa-howtoavoid-2007',
'Summary for Decision Makers. Assessment of Climate Change in the Southwest United States': 'swccar-assessment-climate-change-in-southwest-us',
'Climate Variability and Change in Mobile, Alabama: Task 2 Final Report. Impacts of Climate 25 Change and Variability on Transpo': 'fhwa-hep-12-053',
'Effects of Climatic Variability and Change on Forest Ecosystems: A Comprehensive Science Synthesis for the U.S. Forest Sector': 'usfs-gtr-nrs-87',
'Effects of Climatic Variability and Change on Forest Ecosystems: A Comprehensive Science Synthesis for the U.S. Forest Sector': 'usfs-pnw-gtr-870',
'Future of America\'s Forests and Rangelands Forest Service. 2010 Resources Planning Act Assessment': 'usfs-gtr-wo-87'
......@@ -566,7 +577,9 @@ class Parent(Gcisbase):
'Ecosystem Services Analysis of Climate Change and Urban Growth in the Upper Santa Cruz Watershed: SCWEPM': 'd4622f7e-aca7-42e6-95da-90579a187c30',
'State and Local Climate Adaptation': '7de6bfc9-55fa-4d12-ae80-486561b3802c',
'Climate Change Response Framework - Northwoods': '267378f7-278b-4201-8ffa-a820f5a694b8',
'NWHI Maps and Publications': 'e6438f11-85f4-4c29-abb5-b09efa3279b2'
'NWHI Maps and Publications': 'e6438f11-85f4-4c29-abb5-b09efa3279b2',
'The Cryosphere Today Compare Daily Sea Ice': 'e4a9eb6a-9421-42c3-94b1-47caf588d41d',
'NASA Earth Observatory Visualizing the Sea Ice Minimum': '71b4c19e-42da-4f15-99d2-7c7746d8eaf2'
},
......@@ -577,7 +590,9 @@ class Parent(Gcisbase):
'An update on Earth\'s energy balance in light of the latest global observations': '10.1038/ngeo1580',
'About the Lack of Warming...': ('web_page', 'e2ec2d0f-430c-4032-a309-2514ca1f6572'),
'The Myth of the 1970s Global Cooling Scientific Consensus': '10.1175/2008BAMS2370.1',
'Hurricane Sandy devestates NY/NJ-area passenger rai systems': ('web_page', '135ae7d9-56e3-4dcb-a81c-42a6f1e9b332')
'Hurricane Sandy devestates NY/NJ-area passenger rai systems': ('web_page', '135ae7d9-56e3-4dcb-a81c-42a6f1e9b332'),
'Climate change impacts of US reactive nitrogen': '10.1073/pnas.1114243109',
'Range-wide patterns of greater sage-grouse persistence': '10.1111/j.1472-4642.2008.00502.x'
},
'book': {
......
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