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bin/sync_figures
View file @ 4a44bb43
......@@ -5,7 +5,7 @@ from gcis_clients import WebformClient, GcisClient, gcis_dev_auth, gcis_stage_au
from gcis_clients.sync_utils import move_images_to_gcis, sync_dataset_metadata, realize_contributors, realize_parents
from collections import OrderedDict
webform = WebformClient('http://resources.assessment.globalchange.gov', webform_token)
webform = WebformClient('https://ncares.cicsnc.org', webform_token)
gcis = GcisClient('http://data.gcis-dev-front.joss.ucar.edu', *gcis_dev_auth)
# gcis = GcisClient('http://data-stage.globalchange.gov', *gcis_stage_auth)
......@@ -15,7 +15,7 @@ sync_metadata_tree = {
'nca3': OrderedDict([
#Chapter 2
('our-changing-climate', [
(webform_url, gcis_id)
# (webform_url, gcis_id)
('/metadata/figures/3074', 'ten-indicators-of-a-warming-world'), # 2.1
('/metadata/figures/3293', 'observed-increase-in-frostfree-season-length'), # 2.10
('/metadata/figures/3294', 'projected-changes-in-frostfree-season-length'), # 2.11
......@@ -33,7 +33,10 @@ sync_metadata_tree = {
('/metadata/figures/2939', 'projected-changes-in-soil-moisture-for-the-western-us'), # 2.22
('/metadata/figures/3304', 'observed-trends-in-hurricane-power-dissipation'), # 2.23
('/metadata/figures/3305', 'variation-of-storm-frequency-and-intensity-during-the-cold-season-november--march'), # 2.24
('/metadata/figures/2510', 'north-atlantic-sea-level-change'), # 2.25
('/metadata/figures/3289', 'past-and-projected-changes-in-global-sea-level-rise'), # 2.26
('/metadata/figures/3067', 'ice-cover-in-the-great-lakes'), # 2.27
('/metadata/figures/3168', 'decline-in-arctic-sea-ice-extent'), # 2.28
('/metadata/figures/3073', 'projected-arctic-sea-ice-decline'), # 2.29
('/metadata/figures/3076', 'separating-human-and-natural-influences-on-climate'), #2.3
('/metadata/figures/2940', 'as-oceans-absorb-co-they-become-more-acidic'), # 2.30
......@@ -50,12 +53,21 @@ sync_metadata_tree = {
('water-resources', [
('/metadata/figures/2676', 'projected-changes-in-snow-runoff-and-soil-moisture'), # 3.1
('/metadata/figures/3573', 'projected-changes-in-water-withdrawals'), # 3.11
('/metadata/figures/3290', 'annual-surface-soil-moisture-trends'), # 3.2
('/metadata/figures/3160', 'seasonal-surface-soil-moisture-trends'), # 3.3
('/metadata/figures/3171', 'streamflow-projections-for-river-basins-in-the-western-us'), # 3.4
('/metadata/figures/3303', 'trends-in-flood-magnitude'), # 3.5
('/metadata/figures/3279', 'principal-us-groundwater-aquifers-and-use'), # 3.6
('/metadata/figures/3437', 'observed-changes-in-lake-stratification-and-ice-covered-area'), # 3.7
('/metadata/figures/3003', 'us-freshwater-withdrawal-consumptive-use-and-population-trends'), # 3.8
('/metadata/figures/2920', 'freshwater-withdrawals-by-sector'), # 3.9
('/metadata/figures/3174', 'us-water-withdrawal-distribution'), # 3.10
('/metadata/figures/2921', 'water-challenges-in-a-southeast-river-basin'), # 3.12
]),
#Chapter 4
('energy-supply-and-use', [
('/metadata/figures/3082', 'paths-of-hurricanes-katrina-and-rita-relative-to-oil-and-gas-production-facilities'), # 4.1
('/metadata/figures/3585', 'increase-in-cooling-demand-and-decrease-in-heating-demand'), # 4.2
('/metadata/figures/3292', 'cooling-degree-days'), # 4.3
('/metadata/figures/3291', 'projected-changes-in-seasonal-precipitation'), # 4.4
('/metadata/figures/1536', 'california-power-plants-potentially-at-risk-from-sea-level-rise'), # 4.5
......@@ -63,6 +75,7 @@ sync_metadata_tree = {
#Chapter 5
('transportation', [
('/metadata/figures/3088', 'possible-future-flood-depths-in-mobile-al-with-rising-sea-level'), # 5.1
('/metadata/figures/3089', 'airports-vulnerable-to-storm-surge'), # 5.2
('/metadata/figures/2905', 'gulf-coast-transportation-hubs-at-risk'), # 5.3
('/metadata/figures/3568', 'hurricane-sandy-causes-flooding-in-new-york-city-subway-stations'), # 5.4
('/metadata/figures/2952', 'role-of-adaptive-strategies-and-tactics-in-reducing-impacts-and-consequences'), # 5.5
......@@ -70,7 +83,9 @@ sync_metadata_tree = {
]),
#Chapter 6
('agriculture', [
('/metadata/figures/3510', 'us-agriculture'), # 6.1
('/metadata/figures/2867', 'agricultural-distribution'), #6.2
('/metadata/figures/2868', 'us-agricultural-trade'), # 6.3
('/metadata/figures/3582', 'crop-yield-response-to-warming-in-californias-central-valley'), #6.4
('/metadata/figures/2691', 'projected-changes-in-key-climate-variables-affecting-agricultural-productivity'), # 6.5
('/metadata/figures/3081', 'reduced-winter-chilling-projected-for-california'), # 6.6
......@@ -83,9 +98,9 @@ sync_metadata_tree = {
('/metadata/figures/2977', 'effectiveness-of-forest-management-in-reducing-wildfire-risk'), # 7.2
('/metadata/figures/2978', 'forest-vulnerability-to-changing-climate'), # 7.3
('/metadata/figures/2985', 'forests-can-be-a-source--or-a-sink--for-carbon'), # 7.4
('/metadata/figures/3436', 'forest-growth-provides-an-important-carbon-sink'), # 7.5
('/metadata/figures/3151', 'location-of-potential-forestry-biomass-resources'), # 7.7
('/metadata/figures/3130', 'public-and-private-forestlands'), # 7.8
]),
#Chapter 8
('ecosystems', [
......@@ -106,15 +121,15 @@ sync_metadata_tree = {
]),
#Chapter 10
('water-energy-land-use', [
# ('/metadata/figures/2601', 'energy-water-land-and-climate-interactions'), # 10.1
# ('/metadata/figures/2917', 'the-columbia-river-basin-land-use-and-land-cover'), # 10.10
# ('/metadata/figures/2410', 'coasttocoast-100degree-days-in-2011'), # 10.2
# ('/metadata/figures/2596', 'texas-summer-2011-record-heat-and-drought'), # 10.3
# ('/metadata/figures/3635', 'water-use-for-electricity-generation-by-fuel-and-cooling-technology'), # 10.5
# ('/metadata/figures/3158', 'projected-landuse-intensity-in-2030'), # 10.6
# ('/metadata/figures/2986', 'hydraulic-fracturing-and-water-use'), # 10.7
# ('/metadata/figures/2916', 'renewable-energy-and-land-use'), # 10.8
# ('/metadata/figures/2918', 'water-stress-in-the-us'), # 10.9
('/metadata/figures/2601', 'energy-water-land-and-climate-interactions'), # 10.1
('/metadata/figures/2917', 'the-columbia-river-basin-land-use-and-land-cover'), # 10.10
('/metadata/figures/2410', 'coasttocoast-100degree-days-in-2011'), # 10.2
('/metadata/figures/2596', 'texas-summer-2011-record-heat-and-drought'), # 10.3
('/metadata/figures/3635', 'water-use-for-electricity-generation-by-fuel-and-cooling-technology'), # 10.5
('/metadata/figures/3158', 'projected-landuse-intensity-in-2030'), # 10.6
('/metadata/figures/2986', 'hydraulic-fracturing-and-water-use'), # 10.7
('/metadata/figures/2916', 'renewable-energy-and-land-use'), # 10.8
('/metadata/figures/2918', 'water-stress-in-the-us'), # 10.9
]),
#Chapter 11
......@@ -132,6 +147,9 @@ sync_metadata_tree = {
]),
#Chapter 13
('land-use-land-cover-change', [
('/metadata/figures/2899', 'us-landcover-composition-in-2000'), # 13.1
('', 'projections-of-settlement-densities-20102050'), # 13.2
('/metadata/figures/2901', 'projected-land-covers-20102050'), # 13.3
('/metadata/figures/2902', 'building-loss-by-fires-at-california-wildlandurban-interfaces'), # 13.4
]),
#Chapter 14
......@@ -159,41 +177,52 @@ sync_metadata_tree = {
]),
#Chapter 17
('southeast', [
# ('/metadata/figures/3577', 'billion-dollar-weatherclimate-disasters'), # 17.1
# ('/metadata/figures/2633', 'trends-in-water-availability'), # 17.11
# ('/metadata/figures/3108', 'shrinking-lands-for-tribal-communities'), # 17.2
# ('/metadata/figures/2562', 'southeast-temperature-observed-and-projected'), # 17.3
# ('/metadata/figures/2998', 'projected-change-in-number-of-days-over-95-f'), # 17.4
# ('/metadata/figures/2999', 'projected-change-in-number-of-nights-below-32f'), # 17.5
# ('/metadata/figures/2857', 'local-planning'), # 17.9
('/metadata/figures/3577', 'billion-dollar-weatherclimate-disasters'), # 17.1
('/metadata/figures/3482', 'groundlevel-ozone'), # 17.10
('/metadata/figures/2633', 'trends-in-water-availability'), # 17.11
('/metadata/figures/2859', 'a-southeast-river-basin-under-stress'), # 17.12
('/metadata/figures/3108', 'shrinking-lands-for-tribal-communities'), # 17.2
('/metadata/figures/2562', 'southeast-temperature-observed-and-projected'), # 17.3
('/metadata/figures/2998', 'projected-change-in-number-of-days-over-95-f'), # 17.4
('/metadata/figures/2999', 'projected-change-in-number-of-nights-below-32f'), # 17.5
('/metadata/figures/2855', 'vulnerability-to-sea-level-rise'), # 17.6
('/metadata/figures/2857', 'local-planning'), # 17.9
]),
#Chapter 18
('midwest', [
('/metadata/figures/2550', 'temperatures-are-rising-in-the-midwest'), # 18.1
('/metadata/figures/2992', 'projected-midcentury-temperature-changes-in-the-midwest'), # 18.2
('/metadata/figures/2841', 'crop-yields-decline-under-higher-temperatures'), #18.3
('/metadata/figures/2680', 'forest-composition-shifts'), #18.4
('/metadata/figures/2993', 'reducing-emissions-improving-health'), # 18.5
('/metadata/figures/2994', 'when-it-rains-it-pours'), # 18.6
('/metadata/figures/3159', 'midwest-ice-cover-in-the-great-lakes') #18.7
]),
#Chapter 19
('great-plains', [
# ('/metadata/figures/2697', 'temperature-and-precipitation-distribution-in-the-great-plains'), # 19.1
# ('/metadata/figures/2989', 'projected-change-in-number-of-hot-days'), # 19.2
# ('/metadata/figures/2990', 'projected-change-in-number-of-warm-nights'), # 19.3
# ('/metadata/figures/2991', 'projected-change-in-number-of-heavy-precipitation-days'), # 19.4
# ('/metadata/figures/3002', 'projected-change-in-number-of-consecutive-dry-days'), # 19.5
# ('/metadata/figures/2829', 'increases-in-irrigated-farmland-in-the-great-plains'), # 19.6
# ('/metadata/figures/3280', 'historical-and-current-range-of-sage-grouse-habitat') #19.7
('/metadata/figures/2697', 'temperature-and-precipitation-distribution-in-the-great-plains'), # 19.1
('/metadata/figures/2549', 'days-above-100f-in-summer-2011'), # 19.10
('/metadata/figures/2989', 'projected-change-in-number-of-hot-days'), # 19.2
('/metadata/figures/2990', 'projected-change-in-number-of-warm-nights'), # 19.3
('/metadata/figures/2991', 'projected-change-in-number-of-heavy-precipitation-days'), # 19.4
('/metadata/figures/3002', 'projected-change-in-number-of-consecutive-dry-days'), # 19.5
('/metadata/figures/2829', 'increases-in-irrigated-farmland-in-the-great-plains'), # 19.6
('/metadata/figures/3280', 'historical-and-current-range-of-sage-grouse-habitat'), #19.7
('/metadata/figures/3282', 'population-change-in-the-great-plains') #19.8
]),
#Chapter 20
('southwest', [
('/metadata/figures/2996', 'projected-temperature-increases'), #20.1
('/metadata/figures/2567', 'longer-frostfree-season-increases-stress-on-crops'), # 20.4
('/metadata/figures/2568', 'coastal-risks-posed-by-sea-level-rise-and-high-tides'), #20.5
('/metadata/figures/3484', 'urban-heat-and-public-health'), # 20.6
]),
#Chapter 21
('northwest', [
('/metadata/figures/2849', 'observed-shifts-in-streamflow-timing'), # 21.1
('/metadata/figures/3579', 'future-shift-in-timing-of-stream-flows-reduced-summer-flows'), # 21.2
('/metadata/figures/2850', 'projected-relative-sea-level-rise-for-the-latitude-of-newport-or'), # 21.3
('/metadata/figures/2934', 'rising-sea-levels-and-changing-flood-risks-in-seattle'), # 21.4
('/metadata/figures/2851', 'adapting-the-nisqually-river-delta-to-sea-level-rise'), #21.5
('/metadata/figures/2558', 'forest-mortality'), # 21.6
]),
......@@ -218,12 +247,15 @@ sync_metadata_tree = {
('/metadata/figures/3106', 'observed-ocean-warming'), # 24.1
('/metadata/figures/2560', 'ocean-acidification-reduces-size-of-clams'), #24.3
('/metadata/figures/2853', 'warming-seas-are-a-doubleblow-to-corals') # 24.4
('/metadata/figures/2854', 'fisheries-shifting-north') # 24.5
]),
#Chapter 25
('coastal-zone', [
('/metadata/figures/3570', 'population-change-in-us-coastal-watershed-counties-19702010'), # 25.1
('/metadata/figures/2540', 'adapting-coastal-infrastructure-to-sea-level-rise-and-land-loss'), # 25.5
('/metadata/figures/3430', 'coasttoinland-economic-connections'), # 25.7
('/metadata/figures/2543', 'coastal-ecosystem-services'), # 25.8
('/metadata/figures/3513', 'projected-land-loss-from-sea-level-rise-in-coastal-louisiana'), # 25.9
]),
#Chapter 26
('decision-support', [
......@@ -232,6 +264,7 @@ sync_metadata_tree = {
('/metadata/figures/2950', 'decisionmaking-framework'), # 26.3
('/metadata/figures/2611', 'linking-risk-assessment-and-risk-perception-with-risk-management-of-climate-change'), # 26.4
('/metadata/figures/2962', 'land-use-planning-tool-for-the-upper-santa-cruz-watershed'), # 26.5
('/metadata/figures/2866', 'scenario-planning'), # 26.6
]),
#Chapter 27
('mitigation', [
......@@ -348,7 +381,7 @@ images_with_multiple_figures = {
def main():
print gcis.test_login()
sync(replace=False)
cleanup_after_replace()
# cleanup_after_replace()
def sync(replace=False):
......@@ -374,6 +407,8 @@ def sync(replace=False):
#Hack: override webform's title in favor of gcis
figure_obj.title = gcis_fig.title if gcis_fig.title not in (None, '') else figure_obj.title
#Hack: override webform's url in favor of gics
figure_obj.url = gcis_fig.url if gcis_fig.url not in (None, '') else figure_obj.url
if len(gcis_fig.contributors) > 1:
print '*** Multiple contributors: ', gcis_id
......
gcis_clients/domain.py
View file @ 4a44bb43
......@@ -37,7 +37,8 @@ class Gcisbase(object):
except AttributeError:
pass
finally:
setattr(self, k, data[k])
if data[k]:
setattr(self, k, data[k])
def merge(self, other):
#This sucks
......@@ -84,7 +85,7 @@ class Figure(GcisObject):
self.gcis_fields = [
'usage_limits', 'kindred_figures', 'time_start', 'time_end', 'keywords', 'lat_min', 'create_dt', 'lat_max',
'title', 'ordinal', 'lon_min', 'report_identifier', 'chapter', 'submission_dt', 'uri', 'lon_max',
'caption', 'source_citation', 'attributes', 'identifier', 'chapter_identifier', 'images'
'caption', 'source_citation', 'attributes', 'identifier', 'chapter_identifier', 'images', 'url'
]
super(Figure, self).__init__(data, fields=self.gcis_fields, trans=trans)
......@@ -248,7 +249,7 @@ class Dataset(GcisObject):
super(Dataset, self).__init__(data, fields=self.gcis_fields, trans=trans)
self.identifier = self._identifiers[self.name] if self.name in self._identifiers else self.name
self.identifier = self._identifiers[self.name] if self._identifiers and self.name in self._identifiers else self.name
#Hack to fix a particular kind of bad URL
if self.url and self.url.startswith('ttp://'):
......@@ -404,18 +405,10 @@ class Role(object):
class Parent(Gcisbase):
def __init__(self, data, trans=(), search_hints=None):
def __init__(self, data, trans=(), pubtype_map=None, search_hints=None):
self.gcis_fields = ['relationship', 'url', 'publication_type_identifier', 'label', 'activity_uri', 'note']
self.publication_type_map = {
'report': 'report',
'journal_article': 'article',
'book_section': 'report',
'electronic_article': 'article',
'web_page': 'webpage',
'book': 'book',
'conference_proceedings': 'generic',
}
self.publication_type_map = pubtype_map
self.search_hints = search_hints
self._publication_type_identifier = None
......@@ -426,7 +419,7 @@ class Parent(Gcisbase):
self.relationship = self.relationship if self.relationship else 'prov:wasDerivedFrom'
#HACK to smooth out ambiguous search results
if self.publication_type_identifier in self.search_hints and self.label in \
if self.search_hints and self.publication_type_identifier in self.search_hints and self.label in \
self.search_hints[self.publication_type_identifier]:
hint = self.search_hints[self.publication_type_identifier][self.label]
......@@ -446,7 +439,7 @@ class Parent(Gcisbase):
@publication_type_identifier.setter
def publication_type_identifier(self, value):
self._publication_type_identifier = self.publication_type_map[value] \
if value in self.publication_type_map else '**MISSING**' + value
if self.publication_type_map and value in self.publication_type_map else value
def __repr__(self):
return '{rel}: {type}: {url}: {lbl}'.format(
......
gcis_clients/survey_transforms.py 0 → 100644
View file @ 4a44bb43
__author__ = 'abuddenberg'
gcis_clients/webform_client.py
View file @ 4a44bb43
......@@ -50,7 +50,6 @@ def get_credentials():
class WebformClient:
def __init__(self, url, token, local_image_dir=None, remote_dir='/system/files/'):
self.base_url = url
......@@ -93,7 +92,7 @@ class WebformClient:
#Add provenance information (wasDerivedFrom parent)
if 'what_type_of_source_provided_this_figure' in figure_json and figure_json[
'what_type_of_source_provided_this_figure'] == 'published_source':
f.add_parent(Parent(deepcopy(f.original), trans=trans.PARENT_TRANSLATIONS, search_hints=trans.PARENT_SEARCH_HINTS))
f.add_parent(Parent(deepcopy(f.original), trans=trans.PARENT_TRANSLATIONS, pubtype_map=trans.PARENT_PUBTYPE_MAP, search_hints=trans.PARENT_SEARCH_HINTS))
if 'images' in webform_json[webform_nid]:
for img_idx, image in enumerate(webform_json[webform_nid]['images']):
......
gcis_clients/webform_transforms.py
View file @ 4a44bb43
......@@ -120,7 +120,10 @@ ORG_IDS = {
'Susanne Moser Research & Consulting': 'susanne-moser-research-consulting',
'NEMAC': 'national-environmental-modeling-analysis-center',
'LBNL': 'lawrence-berkeley-national-laboratory',
'Texas Tech University': 'texas-tech-university'
'Texas Tech University': 'texas-tech-university',
'NASA': 'national-aeronautics-space-administration',
'GATech': 'georgia-institute-technology',
'UW': 'university-washington'
}
CONTRIB_ROLES = {
......@@ -156,7 +159,11 @@ CONTRIB_ROLES = {
'William Elder': 'scientist',
'Greg Dobson': 'analyst',
'Michael Wehner': 'scientist',
'Katharine Hayhoe': 'scientist'
'Katharine Hayhoe': 'scientist',
'Walt Meier': 'scientist',
'Aris Georgakakos': 'scientist',
'Matthew Peters': 'scientist',
'Robert Norheim': 'scientist'
}
PARENT_TRANSLATIONS = {
......@@ -169,6 +176,16 @@ PARENT_TRANSLATIONS = {
'title': 'label',
}
PARENT_PUBTYPE_MAP = {
'report': 'report',
'journal_article': 'article',
'book_section': 'report',
'electronic_article': 'article',
'web_page': 'webpage',
'book': 'book',
'conference_proceedings': 'generic',
}
PARENT_SEARCH_HINTS = {
'report': {
'The State of the Climate 2009 Highlights': 'noaa-stateofclim-2009',
......@@ -200,7 +217,15 @@ PARENT_SEARCH_HINTS = {
'2009 State of the Climate Highlights': 'noaa-stateofclim-2009',
'Climate of the Southeast United States: Variability, change, impacts and vulnerability.': ('book', '7951fbd8-5877-41aa-ae62-9da3eb56b5c5'),
'A Reef Manager\'s Guide to Coral Bleaching': ('book', 'd6f69088-1025-4ce7-b0e1-54ab6403a951'),
'Climate Stabilization Targets: Emissions, Concentrations, and Impacts over Decades to Millennia': ('book', 'f5b281a2-38d2-4633-84db-fd37fa0fb3e6')
'Climate Stabilization Targets: Emissions, Concentrations, and Impacts over Decades to Millennia': ('book', 'f5b281a2-38d2-4633-84db-fd37fa0fb3e6'),
'Water Resources Sector Technical Input Report in Support of the U.S. Global Change Research Program': 'nca-waterresourcessector-2013',
'Estimated Use of Water in the United States in 2005': 'usgs-circular-1344',
'Annual Energy Outlook 2008': 'aeo2008',
'Value of U.S. agricultural trade, by fiscal year. U.S. Department of Agriculture, Economic Research Service': ('webpage', '319332d5-ec59-4d6d-8411-5eb57f38141d'),
'Future of America\'s Forest and Rangelands: Forest Service 2010 Resources Planning Act Assessment': 'usfs-gtr-wo-87',
'Assessment of Climate Change in the Southwest United States: A Report Prepared for the National Climate Assessment': ('book', 'c9625c65-c20f-4163-87fe-cebf734f7836'),
'Sea-Level Rise for the Coasts of California, Oregon, and Washington: Past, Present, and Future': ('book', 'a36230af-24e6-42c8-8d68-17bcab910595'),
'Water Planning: A Review of Promising New Methods.': ('generic', '7bd61959-19a0-43ad-80ae-d786619956a1')
},
'webpage': {
......@@ -242,7 +267,8 @@ PARENT_SEARCH_HINTS = {
'Range-wide patterns of greater sage-grouse persistence': '10.1111/j.1472-4642.2008.00502.x',
'Monitoring and understanding changes in heat waves, cold waves, floods and droughts in the United States: State of Knowledge': '10.1175/BAMS-D-12-00066.1',
'How do we know the world has warmed?': '10.1175/BAMS-91-7-StateoftheClimate',
'Attribution of observed historical near-surface temperature variations to anthropogenic and natural causes usingCMIP5simulations': '10.1002/jgrd.50239'
'Attribution of observed historical near-surface temperature variations to anthropogenic and natural causes usingCMIP5simulations': '10.1002/jgrd.50239',
'Evaluating global trends (1988-2010) in harmonized multi-satellite surface soil moisture': '10.1029/2012gl052988'
},
'book': {
......@@ -253,4 +279,4 @@ PARENT_SEARCH_HINTS = {
'Verrazano Narrows Storm Surge Barrier: Against the Deluge: Storm Barriers to Protect New York City, March 31st 2009': '01d188d1-636b-49e6-af43-c1544cee9319',
'National Association of Recreation Resource Planners Annual Conference': 'national-association-of-recreation-resource-planners-annual-conference-2005'
}
}
\ No newline at end of file
}
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